Download Algorithms in Bioinformatics: 4th International Workshop, by Joel V. Earnest-DeYoung, Emmanuelle Lerat, Bernard M. E. PDF

By Joel V. Earnest-DeYoung, Emmanuelle Lerat, Bernard M. E. Moret (auth.), Inge Jonassen, Junhyong Kim (eds.)

This booklet constitutes the refereed complaints of the 4th overseas Workshop on Algorithms in Bioinformatics, WABI 2004, held in Bergen, Norway, in September 2004.

The 39 revised complete papers awarded have been rigorously reviewed and chosen from 117 submissions. one of the themes addressed are all present problems with algorithms in bioinformatics, akin to detailed and approximate algorithms for genomics, genetics, series research, gene and sign attractiveness, alignment, molecular evolution, phylogenetics, constitution selection or prediction, gene expression and gene networks, proteomics, practical genomics, and drug layout.

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Extra resources for Algorithms in Bioinformatics: 4th International Workshop, WABI 2004, Bergen, Norway, September 17-21, 2004. Proceedings

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Comput. , 8(5):483–491, 2001. 2. A. Bergeron, M. Blanchette, A. Chateau, and C. Chauve. Implementation of operations on sets of conserved intervals. Technical report, Computer Science Department, UQAM, To appear. 3. A. Bergeron, J. Mixtaci, and J. Stoye. The reversal distance problem. In O. Gascuel, editor, Mathematics of phylogeny and evolution. Oxford University Press, To appear in 2004. 4. A. Bergeron and J. Stoye. On the similarity of sets of permutations and its applications to genome comparison.

Exact and approximation algorithms for sorting by reversals, with application to genome rearrangement. Algorithmica, 13:180–210, 1995. 13. Pavel Pevzner and Glenn Tesler. Transforming men into mice: the nadeau-taylor chromosomal breakage model revisited. RECOMB, 2003. 14. David Sankoff. Short inversions and conserved gene clusters. Bioinformatics, 18(10):1305–1308, 2002. 15. T. Uno and M. Yagiura. Fast algorithms to enumerate all common intervals of two permutations. Algorithmica, 2000. 16. ME Walter, Z Dias, and J Meidanis.

6. M. Blanchette, T. Kunisawa, and D. Sankoff. Parametric genome rearrangement. Gene, 172(1):GC11–17, 2001. 7. S. S. Lueker. Testing for the consecutive ones property, interval graphs, and graph planarity using P Q-tree algorithms. J. Comput. , 13(3):335–379, 1976. 8. G. A. Pevzner. Genome-scale evolution: Reconstructing gene orders in the ancestral species. , 12(1):26–36, 2002. 9. A. Caprara. Formulations and complexity of multiple sorting by reversals. In 3rd Annual International Conference on Research in Computational Molecular Biology (RECOMB 1999), pages 84–93.

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